While there are so many coordinates that people are using in fMRI world, not many atlases have the same coordinates (well, of course, different images have different sizes).
Some of the common coordinates that are being used to using atlases are the MNI and Talairach coordinates. There are as well about icbm, which I have yet to explore.
Here are some of the resources to the information:
http://talairach.org/index.html
Some softwares that can be used to convert your image into these coordinates:
Matlab conversion functions:
http://www.alivelearn.net/?p=1434
and more if you search it on the internet (which I will add more if I found best ones)
Hope this is a helpful compilations. I'm still having trouble understanding (or probably don't have time to think about it) the best rotation matrix, affine transformation for these fMRI data. Hopefully at least this works and get my data better results. :)
Some of the common coordinates that are being used to using atlases are the MNI and Talairach coordinates. There are as well about icbm, which I have yet to explore.
Here are some of the resources to the information:
http://talairach.org/index.html
Some softwares that can be used to convert your image into these coordinates:
- FSL: They have two different methods - FLIRT and FNIRT
- SPM: https://www.fil.ion.ucl.ac.uk/spm/software/spm12/
Matlab conversion functions:
http://www.alivelearn.net/?p=1434
and more if you search it on the internet (which I will add more if I found best ones)
Hope this is a helpful compilations. I'm still having trouble understanding (or probably don't have time to think about it) the best rotation matrix, affine transformation for these fMRI data. Hopefully at least this works and get my data better results. :)
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